The Surprising Connection Between Coffee and Gut Health (2024)

Does Coffee Help or Harm Your Gut?

• History of Coffee|
• Health Benefits of Coffee|
• Coffee and Gut Health|
• What About Mold?|
• Is Coffee Good For You?|
• Recommended Products|

Some people say coffee is basically the elixir of life. Others say it is full of mycotoxins or chemicals that are not safe for the stomach. Let’s take a look at what the research actually says about coffee and gut health.

A Short History of Coffee

No one knows exactly when the process of drinking coffee started, but we do know that it has been around since at least the 15th century.

Coffee is probably best known for its energy enhancing side effects, and there is even a story that coffee was first discovered by an Ethiopian goat herder who noticed that after eating berries from certain trees, his goats were so energetic that they did not want to sleep at night. When local monks heard of this story, they started making a drink out of the berries to help them stay awake through long prayer sessions [7]. Humans have used coffee ever since.

Coffee is made from harvested berries of Coffea plants. After coffee “cherries” are harvested, they need to be processed either with a wet or dry processing method. After processing, the beans are dried, milled (hulled, polished, and sorted), roasted, and exported. In order to make a cup of coffee, we may grind our own beans or buy them pre-ground [8].

Gut Health Benefits of Coffee

In general, coffee has been found to have health benefits for most people. In fact, an evaluation of 112 meta-analyses of observational studies showed that coffee likely has antioxidant and anti-inflammatory properties. When coffee is consumed over time, these can help to protect against inflammation and chronic inflammatory disease [1].

Decreasing inflammation is beneficial to gut health. Studies have shown that coffee probably has antioxidant, anti-inflammatory, and anti-cancer effects on the lining of the digestive tract [3].

When looking at coffee and gut health specifically, there are a few potential positive effects of coffee:

• People who drank coffee after abdominal surgery recovered gastrointestinal function more quickly than those who didn’t [4].
• Coffee can improve motility (movement of the bowels) in people with constipation [9]. However, that may also mean that coffee may not be helpful for people with diarrhea.
• Coffee has been shown to increase beneficial bacterial strains like Bifidobacteria, which may improve the gut microbiome in some people [10, 11].

Can Coffee Trigger Digestive Symptoms?

In spite of the potential benefits mentioned above, we’re often told (or may have found through personal experience) that drinking coffee triggers or causes a few gastrointestinal issues. Most often, those are IBS, heartburn, and leaky gut. Let’s look at what the research has to say about coffee consumption and these health issues.

Irritable Bowel Syndrome (IBS)

One observational study found that the odds of coffee drinkers developing IBS were 44% greater than those who never drank coffee. The odds were highest in people who drank at least 106.5 mg of caffeine per day [12]. One cup of brewed regular coffee has 95 mg of caffeine and decaf coffee has about 2 mg of caffeine per cup [13]. An informational article from Johns Hopkins lists caffeine (from all sources such as coffee, tea, soda, chocolate, and some headache pills) as one of the top five foods to remove in IBS, because caffeine can stimulate diarrhea [14].

It is important to remember that these are really observations of caffeine intake, not so much coffee alone. Also, there have not yet been any randomized clinical trials to assess coffee’s role in either causing or exacerbating IBS. Rather, it has been observed that anything high in caffeine may increase diarrhea in people with IBS, which is why many people with IBS feel better lowering caffeine consumption [15].

If you have IBS, you may want to cut out coffee while you work to heal your gut, most often by eating an anti-inflammatory, whole and unprocessed foods diet, such as the low-FODMAP diet.

Reflux and Heartburn

Coffee may promote the development of laryngopharyngeal reflux, GERD (gastroesophageal reflux disease), and heartburn, although coffee alone was not studied. Rather, it was part of a longer list of foods and beverages such as alcohol and certain vegetables that seem to be associated with reflux [16, 17].

One small randomized clinical trial of 30 people who were identified to be sensitive to coffee and also have symptoms of GERD (heartburn and/or acid reflux) or dyspepsia (upper abdominal burning) found that drinking coffee caused heartburn, regurgitation, and dyspepsia in most participants. This study also looked at the types of coffee roasting. It found that differences in roasting processes did not cause differences in coffee-induced upper gastrointestinal symptoms [18].

Leaky Gut

Leaky gut (intestinal permeability) is when the lining of the gastrointestinal tract becomes permeable. This weakening of the gut lining then allows toxins to pass into the bloodstream and travel to the brain or other areas of the body, causing systemic inflammation [19]. Many people with leaky gut, or any of the autoimmune conditions associated with leaky gut, report that coffee consumption triggers leaky gut symptoms, such as diarrhea or stomach pain. For this reason, many people with leaky gut cut out coffee as they work to heal their leaky gut.

A 2010 literature review suggested that green coffee (coffee made from unroasted coffee beans, which is not what most of us normally buy) may contribute to leaky gut more than dark roasted coffee. Green coffee has a higher concentration of alpha-dicarbonyls, which are highly prone to glycation (the binding of sugars to proteins or lipids). However, both green and dark roasted coffee have advanced glycation end products (AGEs), which can induce inflammation and may exacerbate leaky gut [20].

Just a note about instant coffee: It has been found to be contaminated with gluten [21]. If you have celiac disease or are sensitive to gluten, instant coffee may not be a good option for you.

A Note About Observational Studies

When looking at the research on coffee, it is important to understand the different types of research studies. In this case, these are observational studies vs. randomized clinical trials (RCT).

RCTs are considered the best type of research, as they control for all factors and seek to find the exact reasons why and how something may be helping or causing harm. In a randomized clinical trial (RCT), participants are randomly put into a very specific and controlled environment in which to test a medication or lifestyle intervention.

Observational studies or reviews of literature look at self-reported correlations in the population. For example, many people with IBS report that drinking coffee triggers diarrhea. However, an observational study does not investigate the mechanism of action, or exactly how and why, coffee triggers an IBS flare-up.

Similarly, observational studies may find that those who regularly consume coffee also have a lower risk of developing a certain kind of disease. But this doesn’t necessarily mean that coffee directly reduces disease risk– it simply points to an association.

These observational studies should not be discounted. They can help guide researchers to discover what they may want to do a clinical trial on. These studies also assist other IBS sufferers by letting them know that cutting coffee may help decrease symptoms, even if we do not know why yet. Still, it’s always important to take these findings with a grain of salt.

What About Mold in Coffee?

When reading about coffee and gut health, you have probably seen claims that coffee contains mycotoxins, fungi, or mold. It’s claimed that these toxins can cause a host of health disorders, everything from leaky gut to brain fog.

Mycotoxins are toxic compounds produced by certain fungi (molds) and are found in many foods and drinks [22, 23].

We go in-depth discussing mycotoxins in coffee and their effects on health in this article. The short summary is that trace amounts of mycotoxins have been found in some coffee. That being said, there are currently no studies that support the assumption that these toxins are at a level that are harmful to our health. In fact, one study showed that coffee drinking did not risk mycotoxin contamination [24].

Anecdotally, some people who are more sensitive to mold report having gastrointestinal symptoms when they drink coffee but not when drinking coffee that has been tested to be low or absent of mold. However, we have been unable to find reputable studies that show any coffee is mycotoxin-free or that a claimed mold-free coffee would cause less stomach distress. The main takeaway here is to always listen to your gut (and body), and if coffee seems to exacerbate any symptoms, cut it out as you work on healing.

Is Coffee Good For You?

Generally, if your gut health is good, coffee should be perfectly fine for you to consume. In fact, it may be beneficial to digestive health due to its anti-inflammatory properties. About two cups of coffee per day are likely good for overall health.

In fact, a 2019 meta-analysis of 40 observational studies and nearly 4 million study participants found that 3.5 cups of coffee per day was associated with the lowest risk of death from any cause at -15%. 2.5 cups per day was associated with the lowest risk of death from heart disease at -17% [25].

However, if your digestive system is not doing well and you experience stomach pain, diarrhea, bloating, or reflux, you may not want to drink coffee as it may trigger symptoms. Focus first on creating a healthy gut with a low-inflammatory diet and probiotics to balance gut bacteria. Once your gut health has been restored, you will probably be able to add coffee back into your life.

It is important to remember that when we have been dealing with chronic diseases, there are many things that may trigger flare ups. While it is very helpful to know if coffee may be one of these triggers, it is even more important to work on the root cause of illness and heal. Cutting out triggers during the healing process is very helpful. While it seems overwhelming at the time, rest assured that you will be able to reintroduce many things back into your life once you are doing better.If you would like more personalized help with assessing and fixing your health, please reach out to us at our clinic. We would be happy to work with you and get you on the path to healing.